Publications

Publications

Welcome to the publications page. Browse our published articles by year.

Publications

Integrating genetics with single-cell multiomic measurements across disease states identifies mechanisms of beta cell dysfunction in type 2 diabetes

Wang, Gaowei and Chiou, Joshua and Zeng, Chun and Miller, Michael and Matta, Ileana and Han, Jee Yun and Kadakia, Nikita and Okino, Mei-Lin and Beebe, Elisha and Mallick, Medhavi and Camunas-Soler, Joan and Dos Santos, Theodore and Dai, Xiao-Qing and Ellis, Cara and Hang, Yan and Kim, Seung K. and MacDonald, Patrick E. and Kandeel, Fouad R. and Preissl, Sebastian and Gaulton, Kyle J. and Sander, Maike

Nature Genetics. 2023 : .


Predictive RNA profiles for early and very early spontaneous preterm birth

Camunas-Soler, Joan and Gee, Elaine P.S. and Reddy, Mitsu and Mi, Jia Dai and Thao, Mainou and Brundage, Tiffany and Siddiqui, Farooq and Hezelgrave, Natasha L. and Shennan, Andrew H. and Namsaraev, Eugeni and Haverty, Carrie and Jain, Maneesh and Elovitz, Michal A. and Rasmussen, Morten and Tribe, Rachel M.

American Journal of Obstetrics and Gynecology. 2022 227: 72.e1--72.e16.


RNA profiles reveal signatures of future health and disease in pregnancy

Rasmussen, Morten and Reddy, Mitsu and Nolan, Rory and Camunas-Soler, Joan and Khodursky, Arkady and Scheller, Nikolai M. and Cantonwine, David E. and Engelbrechtsen, Line and Mi, Jia Dai and Dutta, Arup and Brundage, Tiffany and Siddiqui, Farooq and Thao, Mainou and Gee, Elaine P. S. and La, Johnny and Baruch-Gravett, Courtney and Santillan, Mark K. and Deb, Saikat and Ame, Shaali M. and Ali, Said M. and Adkins, Melanie and DePristo, Mark A. and Lee, Manfred and Namsaraev, Eugeni and Gybel-Brask, Dorte Jensen and Skibsted, Lillian and Litch, James A. and Santillan, Donna A. and Sazawal, Sunil and Tribe, Rachel M. and Roberts, James M. and Jain, Maneesh and Høgdall, Estrid and Holzman, Claudia and Quake, Stephen R. and Elovitz, Michal A. and McElrath, Thomas F.

Nature. 2022 601: 422--427.


Heterogenous impairment of α cell function in type 2 diabetes is linked to cell maturation state

Dai, Xiao-Qing and Camunas-Soler, Joan and Briant, Linford J.B. and dos Santos, Theodore and Spigelman, Aliya F. and Walker, Emily M. and Arrojo e Drigo, Rafael and Bautista, Austin and Jones, Robert C. and Avrahami, Dana and Lyon, James and Nie, Aifang and Smith, Nancy and Zhang, Yongneng and Johnson, Janyne and Manning Fox, Jocelyn E. and Michelakis, Evangelos D. and Light, Peter E. and Kaestner, Klaus H. and Kim, Seung K. and Rorsman, Patrik and Stein, Roland W. and Quake, Stephen R. and MacDonald, Patrick E.

Cell Metabolism. 2022 34: 256--268.e5.


Combinatorial transcription factor profiles predict mature and functional human islet α and β cells

Shrestha, Shristi and Saunders, Diane C. and Walker, John T. and Camunas-Soler, Joan and Dai, Xiao-Qing and Haliyur, Rachana and Aramandla, Radhika and Poffenberger, Greg and Prasad, Nripesh and Bottino, Rita and Stein, Roland and Cartailler, Jean-Philippe and Parker, Stephen C.J. and MacDonald, Patrick E. and Levy, Shawn E. and Powers, Alvin C. and Brissova, Marcela

JCI Insight. 2021 6: e151621.


Patch-Seq Links Single-Cell Transcriptomes to Human Islet Dysfunction in Diabetes

Camunas-Soler, Joan and Dai, Xiao-Qing and Hang, Yan and Bautista, Austin and Lyon, James and Suzuki, Kunimasa and Kim, Seung K. and Quake, Stephen R. and MacDonald, Patrick E.

Cell Metabolism. 2020 31: 1017--1031.e4.


Noninvasive blood tests for fetal development predict gestational age and preterm delivery

Ngo, Thuy T. M. and Moufarrej, Mira N. and Rasmussen, Marie-Louise H. and Camunas-Soler, Joan and Pan, Wenying and Okamoto, Jennifer and Neff, Norma F. and Liu, Keli and Wong, Ronald J. and Downes, Katheryne and Tibshirani, Robert and Shaw, Gary M. and Skotte, Line and Stevenson, David K. and Biggio, Joseph R. and Elovitz, Michal A. and Melbye, Mads and Quake, Stephen R.

Science. 2018 360: 1133--1136.


Noninvasive Prenatal Diagnosis of Single-Gene Disorders by Use of Droplet Digital PCR

Camunas-Soler, Joan and Lee, Hojae and Hudgins, Louanne and Hintz, Susan R and Blumenfeld, Yair J and El-Sayed, Yasser Y and Quake, Stephen R

Clinical Chemistry. 2018 64: 336--345.


Experimental measurement of binding energy, selectivity, and allostery using fluctuation theorems

Camunas-Soler, Joan and Alemany, Anna and Ritort, Felix

Science. 2017 355: 412--415.


Numerous uncharacterized and highly divergent microbes which colonize humans are revealed by circulating cell-free DNA

Kowarsky, Mark and Camunas-Soler, Joan and Kertesz, Michael and De Vlaminck, Iwijn and Koh, Winston and Pan, Wenying and Martin, Lance and Neff, Norma F. and Okamoto, Jennifer and Wong, Ronald J. and Kharbanda, Sandhya and El-Sayed, Yasser and Blumenfeld, Yair and Stevenson, David K. and Shaw, Gary M. and Wolfe, Nathan D. and Quake, Stephen R.

Proceedings of the National Academy of Sciences. 2017 114: 9623--9628.


Single molecule high-throughput footprinting of small and large DNA ligands

Manosas, Maria and Camunas-Soler, Joan and Croquette, Vincent and Ritort, Felix

Nature Communications. 2017 8: 304.


Simultaneously Monitoring Immune Response and Microbial Infections during Pregnancy through Plasma cfRNA Sequencing

Pan, Wenying and Ngo, Thuy T M and Camunas-Soler, Joan and Song, Chun-Xiao and Kowarsky, Mark and Blumenfeld, Yair J and Wong, Ronald J and Shaw, Gary M and Stevenson, David K and Quake, Stephen R

Clinical Chemistry. 2017 63: 1695--1704.


Elastic Properties of Nucleic Acids by Single-Molecule Force Spectroscopy

Camunas-Soler, Joan and Ribezzi-Crivellari, Marco and Ritort, Felix

Annual Review of Biophysics. 2016 45: 65--84.


Single-molecule measurement of the effective temperature in non-equilibrium steady states

Dieterich, E. and Camunas-Soler, J. and Ribezzi-Crivellari, M. and Seifert, U. and Ritort, F.

Nature Physics. 2015 11: 971--977.